PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g043950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 257aa    MW: 29470.1 Da    PI: 8.0861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g043950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1984132355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ +l+g
  Csa16g043950.1  84 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEKAALAYDRAAFQLRG 132
                     9******9.**********965...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.66983140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3183141IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2283141IPR016177DNA-binding domain
SMARTSM003801.5E-3683146IPR001471AP2/ERF domain
CDDcd000181.69E-3284142No hitNo description
PRINTSPR003676.3E-118495IPR001471AP2/ERF domain
PfamPF008471.3E-1384132IPR001471AP2/ERF domain
PRINTSPR003676.3E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAAIDMFSSN KDLYFRPLIE TAPISFHESN ASSGFNQPKP LGLNQLTQYQ IHQIQNQLNH  60
RHSTISNRIR TKSFSPSSKT KNLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFETAEKAA  120
LAYDRAAFQL RGDISKLNFP NLRHEDVNPL PSSVDAKLQA ICKSLRKTED QTEETCCVSD  180
KTEFFLPKTE FVLPKTEYFD TKEFSDVSPR TDENSNSNMA FLDFWDSEFE KTGSFGLVKF  240
PSVEIDWDAI SKLSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2284140360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A3e-2284140663ATERF1
2gcc_A3e-2284140663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071681e-125AC007168.5 Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence.
GenBankCP0026851e-125CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472214.10.0PREDICTED: ethylene-responsive transcription factor ERF056-like
SwissprotQ9SIE41e-125ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLR0G1431e-127R0G143_9BRAS; Uncharacterized protein
STRINGscaffold_400172.11e-123(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-126ERF family protein